The detailed information of tRNA gene sequence


Sequence ID>W141021550
Genome IDAJME01000168
Search identical group
Phylum/ClassGammaproteobacteria
SpeciesAggregatibacter actinomycetemcomitans serotype a str. A160 [AJME]
Start position on genome 4287
End posion on genome 4381
Amino Acid SeC(p)
Anticodon TCA
Upstream region at tRNA start position 
atttccaaga
tRNA gene sequence 
GGAAGATCGTCGTTTCCGGTGAGACGGCAGGACTTCAAATCCTGTTGAGGCTGCCAGCAG
TCTTAGGTAGGTTCAACTCCTACGATCTTCCGCCA
Downstream region at tRNA end position 
acccacataa
Secondary structure (Cloverleaf model)
>W141021550	SeC(p)	TCA
                   a      GCCA acccacataa
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     A - T
                     T - A
                     C - G          T C
                    G     C A T C C     A
      C C T        T      | | | | |     A
    G       T T G C       G T A G G     C
    G       + | | |                 T T
    T       G A C G
      G A          G     TTGAGGCTGCCAGCAGTCTTAG
                    C - G
                    A - T
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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