The detailed information of tRNA gene sequence


Sequence ID>w001171
Genome IDAATI01000003
Search identical group
Phylum/ClassChloroflexota
SpeciesHerpetosiphon aurantiacus ATCC 23779 [AATI]
Start position on genome 139717
End posion on genome 139813
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
tgttgccagt
tRNA gene sequence 
GGGAGTACATGGGGTCTGGTGGCCTCGTCAGTCTTCAAAATTGGTCGGCGCTATGACGAA
TAGCGTTGGTGTGTTCGATTCGCACGTACTCCCGCCA
Downstream region at tRNA end position 
gaccctaatt
Secondary structure (Cloverleaf model)
>w001171	SeC	TCA
                   t      GCCA gaccctaatt
                     G - C
                     G - C
                     G - C
                     A - T
                     G - C
                     T - A
                     A - T
                     C - G          T T
                    A     C A C G C     A
      T C T        T      | | | + |     G
    G       G G G G       G T G T G     C
    G       | | + |                 T T
    T       C C T C
      G G          G     TCGGCGCTATGACGAATAGCGTTG
                    T + G
                    C - G
                    A - T
                    G + T
                    T - A
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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