The detailed information of tRNA gene sequence


Sequence ID>w000242
Genome IDABCS01000015
Search identical group
Phylum/ClassMyxococcota
SpeciesPlesiocystis pacifica SIR-1 [ABCS]
Start position on genome 3313
End posion on genome 3402
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
gaacattttg
tRNA gene sequence 
GGGGGACTAGCCGACAGCAGGCGACGGCACCCGGTTGCTAGCCGGACGAGACGCATGTCC
TTGGGAGTTCGACCCTCCCTCCCTCCGCTC
Downstream region at tRNA end position 
cacgcccact
Secondary structure (Cloverleaf model)
>w000242	Ser	GCT
                   g      GCTC cacgcccact
                     G - C
                     G - C
                     G + T
                     G - C
                     G - C
                     A   C
                     C   T          C C
                    T     C C C T C     A
    G A C A        A      | | | | |     G
  C         G C C G       G G G A G     C
  A         | | | |                 T T
  G         C G G C
    G C G A        A     CGAGACGCATGTCCTT
                    C   A
                    C - G
                    C - G
                    G - C
                    G - C
                  T       G
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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