The detailed information of tRNA gene sequence


Sequence ID>WENV181231278
Genome IDOFEK01017430
Search identical group
Phylum/Class[OFEK] activated sludge metagenome; Anaerobic digester
Species
Start position on genome 1551
End posion on genome 1454
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
tttcaggtac
tRNA gene sequence 
GGAAGCGCGTCGGTCGCTGGTGGGCCGCCCGGTCTTCAAAACCGGTGTGGGGGGTGAGAA
ACTTCCCGGGTGGGTTCGATTCCCATGCGCTTCCGCCA
Downstream region at tRNA end position 
ttacatgttt
Secondary structure (Cloverleaf model)
>WENV181231278	SeC	TCA
                   c      GCCA ttacatgttt
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     C - G
                     G - C
                     C - G          T T
                    G     T A C C C     A
      C G C        T      + | | | |     G
    T       T G G C       G T G G G     C
    G       + | | |                 T T
    G       G C C G
      T G G        C     TGTGGGGGGTGAGAAACTTCCCGG
                    C - G
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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