The detailed information of tRNA gene sequence


Sequence ID>W08004334
Genome IDABHJ01000006
Search identical group
Phylum/ClassAquificota
SpeciesHydrogenivirga sp. 128-5-R1-1 [ABHJ]
Start position on genome 38154
End posion on genome 38252
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
tggaggagta
tRNA gene sequence 
GGGAGAGGTTGGTAGGCTGGTGCCGCCCCGGGACTTCAAATCCCGTGGGAGGTCCCGCGA
GGGGTCTCCGGAGGGTTCAATTCCCTCCCTCTCCCGCCA
Downstream region at tRNA end position 
gggggagaca
Secondary structure (Cloverleaf model)
>W08004334	SeC	TCA
                   a      GCCA gggggagaca
                     G - C
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T T
                    T     C T C C C     A
      C G G        T      | | | | |     A
    T       A T G G       G A G G G     C
    G         + | |                 T T
    G       C G C C
      T G C        C     TGGGAGGTCCCGCGAGGGGTCTCCG
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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