The detailed information of tRNA gene sequence


Sequence ID>C08012712
Genome IDCP001053
Search identical group
Phylum/ClassBetaproteobacteria
SpeciesParaburkholderia phytofirmans PsJN [CP001052, CP001053]
Start position on genome 2844443
End posion on genome 2844348
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
ggtcacctta
tRNA gene sequence 
GGAAGGCATTCGTGTCCGGTGGCGCGGCTGGGCTTCAAACCCAGTTGAGGGCGTCAGACG
CTCTCAGGTCGGTTCGACTCCGGCTGCCTTCCGCCA
Downstream region at tRNA end position 
catgggcttt
Secondary structure (Cloverleaf model)
>C08012712	SeC	TCA
                   a      GCCA catgggcttt
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     G - C
                     C - G
                     A - T          T C
                    T     C G G C C     A
      C C T        T      | + | | |     G
    G       G T G C       G T C G G     C
    G       | + | |                 T T
    T       C G C G
      G G          G     TTGAGGGCGTCAGACGCTCTCAG
                    C - G
                    T - A
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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