The detailed information of tRNA gene sequence


Sequence ID>CL08000007
Genome IDCP001132
Search identical group
Phylum/ClassAcidithiobacillia
SpeciesAcidithiobacillus ferrooxidans ATCC 53993 [CP001132]
Start position on genome 1746520
End posion on genome 1746209
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
agcgggccaC
tRNA gene sequence 
GGAGGTGTGGCAGAGCGGTTGATTGCACCGGTCTTGAAAACCGGCAGGGGTTAACGCCCC
TCGTGAGTTCGAATCTCACCGCCTCCGCCA
Downstream region at tRNA end position 
Tataaacgaa
Secondary structure (Cloverleaf model)
>CL08000007	Ser	TGA
                   C      GCCA Tataaacgaa
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     T + G
                     G - C          T A
                    T     C A C T C     A
      C G A        G      | | | | |     G
    G       G A C G       G T G A G     C
    G       + | | |                 T T
    T       T T G C
      T G A        A     CAGGGGTTAACGCCCCTC
                    C - G
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T*G A
intron: position=35, length=220 (in A-loop)
GTCCCCAATCGAGCCCCTGCCGGGAAACGGGCAGGGTGACAGGAATCAAATTCGGCGAATCCCCTGGTTT
GTCCGAGGTAACGCCGAGCCAAGCCGGAAAGGTTCCGGAAGGTGTAGAGATCAGACGGTTCCCACCTACA
GCCTCATGGCCAGGGTGAAGGCATGATCCAGACTCCAAAAGGGCCCTCATGGTCCTGTGGCGAAAGCCAT
GGTGGGTAAG
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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