The detailed information of tRNA gene sequence


Sequence ID>CL08000009
Genome IDCP000927
Search identical group
Phylum/ClassAlphaproteobacteria
SpeciesCaulobacter sp. K31 [CP000927]
Start position on genome 4086899
End posion on genome 4087206
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
cgcggtttag
tRNA gene sequence 
GCGGGCGTGGCGGAACTGGTAGACGCAACGGACTTAAAATCCGTCAGCCGCAAGGCTATG
CCGGTTCGATTCCGGCCGCCCGCACCc
Downstream region at tRNA end position 
ctcccggatt
Secondary structure (Cloverleaf model)
>CL08000009	Leu	TAA
                   g      ACCc ctcccggatt
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C          T T
                    T     C G G C C     A
      C A A        G      | | | | |     G
    T       G G C G       G C C G G     C
    G         | | |                 T T
    G       A C G C
      T A G        A     CAGCCGCAAGGCTAT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=221 (in A-loop)
AAGCCAAAAGGATTGAGTGCGCCCGGGGAAATCCGGGACGTAGAACTGCTCAAATTCGGGGAACCCTGTC
AGATGGCGATCCCGAGCCAAGCCCCTCCCCGGGGAAGGTGTAGAGACTAGACGGGCAGCACCTAACCTCC
GACTTTCGGAGCACGGTGAAGGGATAGTCCAGACCACGAACGGCCCGATCCTGGGGCGGCGGCGAAAGCC
GAAGTGGTACG
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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