The detailed information of tRNA gene sequence


Sequence ID>ENV08000874
Genome IDABMK01169394
Search identical group
Phylum/Classmarine metagenome; microbial fraction (100-045 micron) from water below the boundary layer (eg, crevices and benthic surfaces) of Palmyra (Northern Line Islands)
Species
Start position on genome 103
End posion on genome 29
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
nnnnnnnngA
tRNA gene sequence 
GGCTAGATAACATAATGGCAATGTATTGGATTGCAAATCCTGTAATGGCGGTTCGATTCC
GCCTCTAGCCTTCA
Downstream region at tRNA end position 
acaagccttc
Secondary structure (Cloverleaf model)
>ENV08000874	Cys	GCA
                   A      TTCA acaagccttc
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T
                     G - C
                     A - T          T T
                    T     C C G C C     A
        A A        A      | | | | |     G
      T     T A C A       G G C G G     C
      G     | | | |                 T T
      G     A T G T
        C A        A     TAAT
                    T + G
                    T   T
                    G - C
                    G - C
                    A - T
                  T       A
                  T       A
                    G C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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