The detailed information of tRNA gene sequence


Sequence ID>ENV08001060
Genome IDABMO01053454
Search identical group
Phylum/ClassCoral metagenome; microbial fraction from Porites astreoides tissues; contains sequences from fungi (presumably spores), bacteria, viruses, and the coral mitochondria
Species
Start position on genome 10
End posion on genome 82
Amino Acid Pseudo
Anticodon CAT
Upstream region at tRNA start position 
ntttataatc
tRNA gene sequence 
GCCTGTTTAGCTTAATTGGTAAAGTATACTGCTCATGACAGTAATTATAAAAGTTCAAGT
CTTTTGATAGGTAagt
Downstream region at tRNA end position 
agtaaatgga
Secondary structure (Cloverleaf model)
>ENV08001060	Pseudo	CAT
                   c      Aagt agtaaatgga
                     G + T
                     C - G
                     C - G
                     T - A
                     G + T
                     T - A
                     T + G          T G
                    T     T T T T C     A
      T A A        A      | | | | |     A
    T       T T C G       A A A A G     C
    G       | | | +                 T T
    G       A A G T
      T A          A     ATTAT
                    T - A
                    A - T
                    C - G
                    T - A
                    G - C
                  C       A
                  T       G
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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