The detailed information of tRNA gene sequence


Sequence ID>ENV08001149
Genome IDABMP01003959
Search identical group
Phylum/Classsaltern metagenome; viral fraction from low salinity saltern in San Diego, CA
Species
Start position on genome 53
End posion on genome 129
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
ttaaatatat
tRNA gene sequence 
GTCCCCATCGTCTAGTCAGGTCTAGGACACTACCCTTTCACGGTAGCGACACGGGTTCAA
ATCCCGTTGGGGATACCn
Downstream region at tRNA end position 
nnnnnnnnnn
Secondary structure (Cloverleaf model)
>ENV08001149	Glu	TTC
                   t      ACCn nnnnnnnnnn
                     G + T
                     T - A
                     C - G
                     C - G
                     C - G
                     C - G
                     A - T          T A
                    T     T G C C C     A
    C T G A        C      | | | | |     A
  A         T C T G       A C G G G     C
  G         + | | |                 T T
  G         G G A C
    T C T A        A     CGAC
                    C - G
                    T - A
                    A - T
                    C - G
                    C - G
                  C       C
                  T       A
                    T T C
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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