The detailed information of tRNA gene sequence


Sequence ID>ENV08001174
Genome IDABMR01004028
Search identical group
Phylum/Classsaltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
Species
Start position on genome 7
End posion on genome 81
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position 
nnnnagttac
tRNA gene sequence 
GCTCCCATCGTCTAGCGGTTAGGACGCTGCCCTCTCAAGGCGGAAACCGGGGTTCAAGTC
CCCGTGGGAGCACCA
Downstream region at tRNA end position 
tttactgttt
Secondary structure (Cloverleaf model)
>ENV08001174	Glu	CTC
                   c      ACCA tttactgttt
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     C - G
                     A - T          T G
                    T     G C C C C     A
      C G A        C      | | | | |     A
    G       T C T G       C G G G G     C
    G       + | | |                 T T
    T       G G A C
      T A          G     AAAC
                    C - G
                    T + G
                    G - C
                    C - G
                    C - G
                  C       A
                  T       A
                    C T C
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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