The detailed information of tRNA gene sequence


Sequence ID>ENV08001522
Genome IDABNG01002864
Search identical group
Phylum/Classfreshwater metagenome; microbial fraction from prebead pond at Kent SeaTech (Salton Sea, CA)
Species
Start position on genome 4
End posion on genome 78
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
nnnnnnncct
tRNA gene sequence 
GGATCGGTAGTTCAGTCGGTTAGAATGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG
TCCCGTCCGGTCCGCag
Downstream region at tRNA end position 
aggcccaact
Secondary structure (Cloverleaf model)
>ENV08001522	Asp	GTC
                   t      GCag aggcccaact
                     G - C
                     G - C
                     A - T
                     T + G
                     C - G
                     G - C
                     G - C          T G
                    T     T G C C C     A
      T G A        A      + | | | |     G
    C       C T T G       G C G G G     C
    G       | | | +                 T T
    G       G A A T
      T T A        G     AGGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       C
                  T       A
                    G T C
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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