The detailed information of tRNA gene sequence


Sequence ID>ENV08001565
Genome IDABNJ01006567
Search identical group
Phylum/Classmosquito metagenome; viral fraction from mixed species mosquitoes collected at Buena Vista Lagoon in Oceanside, CA
Species
Start position on genome 128
End posion on genome 52
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
nnnnnnnnnn
tRNA gene sequence 
CGCGGGATGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAA
TCCGGCTCCCGCAACCA
Downstream region at tRNA end position 
attaagcacc
Secondary structure (Cloverleaf model)
>ENV08001565	Met	CAT
                   n      ACCA attaagcacc
                     C   A
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     C G G C C     A
      C G A        G      | + | | |     A
    C       C G A G       G T C G G     C
    T       | | | |                 T T
    G       G C T C
      G T A        G     AGGTC
                    T - A
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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