The detailed information of tRNA gene sequence


Sequence ID>ENV08001573
Genome IDABNJ01020371
Search identical group
Phylum/Classmosquito metagenome; viral fraction from mixed species mosquitoes collected at Buena Vista Lagoon in Oceanside, CA
Species
Start position on genome 3
End posion on genome 89
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
nnnnnnnnat
tRNA gene sequence 
GCCAGTGTGGTGAAATTGGTAGACACACGGGATTCAAAATCCCGCGCCCTTAAAAGCGTG
CCGGTTCGACTCCGGCCACTGGTACCA
Downstream region at tRNA end position 
cttcaaagcc
Secondary structure (Cloverleaf model)
>ENV08001573	Leu	CAA
                   t      ACCA cttcaaagcc
                     G + T
                     C - G
                     C - G
                     A - T
                     G - C
                     T - A
                     G - C          T C
                    T     C G G C C     A
      T A A        G      | | | | |     G
    T       A G T G       G C C G G     C
    G         | | |                 T T
    G       A C A C
      T A G        A     CGCCCTTAAAAGCGT
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  T       A
                  T       A
                    C A A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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