The detailed information of tRNA gene sequence


Sequence ID>WENV170011120
Genome IDAPMI01044518
Search identical group
Phylum/Class[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
Species
Start position on genome 499
End posion on genome 589
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
gcggctcgac
tRNA gene sequence 
GGAGAGGTGGCCGAGTGGTCGAAGGCGCTCCCCTGCTAAGGGAGTAGAGGTCAAAAGCTT
CTCGTGGGTTCGAATCCCATCCTCTCCGCCA
Downstream region at tRNA end position 
gtttccggtc
Secondary structure (Cloverleaf model)
>WENV170011120	Ser	GCT
                   c      GCCA gtttccggtc
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     T A C C C     A
      T G A        G      + | | | |     G
    G       G C C G       G T G G G     C
    G         | | |                 T T
    T       A G G C
      C G A        G     TAGAGGTCAAAAGCTTCTC
                    C - G
                    T - A
                    C - G
                    C - G
                    C - G
                  C       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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