The detailed information of tRNA gene sequence


Sequence ID>WENV170017426
Genome IDBART01027294
Search identical group
Phylum/Class[BART] marine sediment metagenome; marine subsurface sediment at 5.1 meters below seafloor (mbsf), off the Shimokita Peninsula
Species
Start position on genome 720
End posion on genome 628
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
aaaaaatttt
tRNA gene sequence 
GGCCCTTGACGGTTAGAGTGGTCTCTGACACTGGGCTTCAAACCCAGTTATCCTGCGGAG
GGATAGGGGTTCGATTCCCCTCGAGGGCCGCCA
Downstream region at tRNA end position 
atggataagt
Secondary structure (Cloverleaf model)
>WENV170017426	SeC	TCA
                   t      GCCA atggataagt
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     T - A
                     T + G
                     G - C          T T
                    A     T C C C C     A
    G A G A        C      | | | | |     G
  T         T T G G       A G G G G     C
  G           +   |                 T T
  G         T G A C
    T C T C        A     TTATCCTGCGGAGGGAT
                    C - G
                    T - A
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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