The detailed information of tRNA gene sequence


Sequence ID>WENV170018471
Genome IDBARW01023293
Search identical group
Phylum/Class[BARW] marine sediment metagenome; marine subsurface sediment at 107.0 meters below seafloor (mbsf), off the Shimokita Peninsula
Species
Start position on genome 791
End posion on genome 702
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
nnnctgcttt
tRNA gene sequence 
GGAGGGGTGTCCGAGCGGTCTATGGTGATGGTCTTGAAAACCGTTGTCCCCGCAAGGGGA
CCGTGGGTTCGAATCCCACCCCCTCCGCCA
Downstream region at tRNA end position 
ctaatggcgt
Secondary structure (Cloverleaf model)
>WENV170018471	Ser	TGA
                   t      GCCA ctaatggcgt
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
      C G A        G      | | | | |     G
    G       G C C T       G T G G G     C
    G       + | |                   T T
    T       T G G T
      C T A        G     TGTCCCCGCAAGGGGACC
                    A - T
                    T + G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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