The detailed information of tRNA gene sequence


Sequence ID>WENV170019375
Genome IDBBPD01009404
Search identical group
Phylum/Class[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
Species
Start position on genome 492
End posion on genome 406
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
gccaaggccg
tRNA gene sequence 
tGCCTCCGTGGCGGAATTGGTAGACGCAACGGTCTTCAAAACCGACGCCGGGCAGGCTTT
GGGGGTTCAAGTCCCCCCGGGGGCACCAc
Downstream region at tRNA end position 
cgcaaccgct
Secondary structure (Cloverleaf model)
>WENV170019375	SeC	TCA
                   g      CCAc cgcaaccgct
                     t - A
                     G - C
                     C - G
                     C - G
                     T + G
                     C - G
                     C - G
                     G - C          T G
                    T     C C C C C     A
      T A A        G      | | | | |     A
    T       G G C G       G G G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        A     CGCCGGGCAGGCTTT
                    A   A
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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