The detailed information of tRNA gene sequence


Sequence ID>WENV170020339
Genome IDBBPE01006118
Search identical group
Phylum/Class[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
Species
Start position on genome 4571
End posion on genome 4484
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
gccccgcgcg
tRNA gene sequence 
GGAAGGGTGGGTGAGTGGCCTATACCAGCACGTTGGAAACGTGCCGTGCCCCCGGGCACC
GCGAGTTCGAATCTCGCCTCTTCCGCCA
Downstream region at tRNA end position 
cgccgcttgc
Secondary structure (Cloverleaf model)
>WENV170020339	Ser	GGA
                   g      GCCA cgccgcttgc
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     G + T
                     G - C          T A
                    T     C G C T C     A
      T G A        G      | | | | |     G
    G       G T G G       G C G A G     C
    G       + | | |                 T T
    C       T A C C
      C T A        A     CGTGCCCCCGGGCACC
                    G - C
                    C - G
                    A - T
                    C - G
                    G - C
                  T       A
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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