The detailed information of tRNA gene sequence


Sequence ID>WENV170020624
Genome IDBBPE01015069
Search identical group
Phylum/Class[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
Species
Start position on genome 2422
End posion on genome 2514
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
ttaatccgtc
tRNA gene sequence 
GGAGAGGTACCGAAGTTGGTCATAACGGCGCTGTTTCGAAAACAGTTGGTCCTTTTTAGG
GGCACGTGGGTTCGAATCCCACCCTCTCCGCCT
Downstream region at tRNA end position 
tnnnnnnnnn
Secondary structure (Cloverleaf model)
>WENV170020624	Ser	CGA
                   c      GCCT tnnnnnnnnn
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C A C C C     A
    T T G A        A      | | | | |     G
  G         A G C C       G T G G G     C
  G           | | |                 T T
  T         A C G G
    C A T A        C     TGGTCCTTTTTAGGGGCAC
                    G + T
                    C - G
                    T - A
                    G - C
                    T - A
                  T       A
                  T       A
                    C G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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