The detailed information of tRNA gene sequence


Sequence ID>WENV170021173
Genome IDBBPF01003627
Search identical group
Phylum/Class[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
Species
Start position on genome 11913
End posion on genome 11818
Amino Acid SeC(p)
Anticodon TCA
Upstream region at tRNA start position 
cataaaaatt
tRNA gene sequence 
GGGAGTAGATAGGGCGCTGGTGTCCCTCCTGGACTTCAAATCCAGTGGCAGGTGAGTTCC
ACCTGTGGTGGGTTCGATTCCCACACACTCCCGCCA
Downstream region at tRNA end position 
tttattatta
Secondary structure (Cloverleaf model)
>WENV170021173	SeC(p)	TCA
                   t      GCCA tttattatta
                     G - C
                     G - C
                     G - C
                     A - T
                     G - C
                     T - A
                     A   C
                     G   A          T T
                    A     C A C C C     A
      C G C        T      | | | | |     G
    T       G G G A       G T G G G     C
    G       | | | |                 T T
    G       C C C T
      T G T        C     TGGCAGGTGAGTTCCACCTGTG
                    C - G
                    T - A
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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