The detailed information of tRNA gene sequence


Sequence ID>ENV08002208
Genome IDABON01028018
Search identical group
Phylum/Classfreshwater metagenome; microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
Species
Start position on genome 18
End posion on genome 105
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
gcacaaaaaa
tRNA gene sequence 
GAAGAGGTGTCCGAGTGGTTGAAGGAGCAAGCCTGGAAAGTTTGTATGTGGGTAACTGCA
TCGTGGGTTCGAATCCCATCCTCTCTGCnn
Downstream region at tRNA end position 
nnnnnnnnnn
Secondary structure (Cloverleaf model)
>ENV08002208	Ser	GGA
                   a      GCnn nnnnnnnnnn
                     G + T
                     A   C
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     T A C C C     A
      T G A        G      + | | | |     G
    G       G C C T       G T G G G     C
    G         | | |                 T T
    T       A G G A
      T G A        G     TATGTGGGTAACTGCATC
                    C - G
                    A - T
                    A - T
                    G + T
                    C - G
                  C       A
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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