The detailed information of tRNA gene sequence


Sequence ID>ENV08002219
Genome IDABPP01000958
Search identical group
Phylum/Classmicrobial mat metagenome; Guerrero Negro Hypersaline Mat 01; altitude 310m AMSL; sample depth 1m below water level, 0-1mm depth into the mat
Species
Start position on genome 272
End posion on genome 348
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
ttcgggaaat
tRNA gene sequence 
GGGCTATTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCCCTGGTTCGAG
TCCAGGATGGCCCACCT
Downstream region at tRNA end position 
gttctgttca
Secondary structure (Cloverleaf model)
>ENV08002219	Ile	GAT
                   t      ACCT gttctgttca
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     A - T
                     T - A          T G
                    T     G G A C C     A
      G G A        A      | | | | |     G
    T       C T C G       C C T G G     C
    G       | | | |                 T T
    G       G A G C
      T T A        G     AGGTC
                    C - G
                    A - T
                    C - G
                    C - G
                    C - G
                  C       A
                  T       A
                    G A T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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