The detailed information of tRNA gene sequence


Sequence ID>ENV08002220
Genome IDABPP01000958
Search identical group
Phylum/Classmicrobial mat metagenome; Guerrero Negro Hypersaline Mat 01; altitude 310m AMSL; sample depth 1m below water level, 0-1mm depth into the mat
Species
Start position on genome 365
End posion on genome 437
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
ttcaggaaga
tRNA gene sequence 
GGGGGTATAGCTCAGCTGGTAGAGCGCTGCCTTTGCAAGGCAGATGTCAGCGGTTCGAGT
CCGCTTACCTCCAtcc
Downstream region at tRNA end position 
ttccccaaga
Secondary structure (Cloverleaf model)
>ENV08002220	Ala	TGC
                   a      Atcc ttccccaaga
                     G - C
                     G - C
                     G + T
                     G - C
                     G - C
                     T - A
                     A - T          T G
                    T     T C G C C     A
      C G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     ATGTC
                    C - G
                    T - A
                    G - C
                    C - G
                    C - G
                  T       A
                  T       A
                    T G C
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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