The detailed information of tRNA gene sequence


Sequence ID>ENV08002251
Genome IDABPP01006623
Search identical group
Phylum/Classmicrobial mat metagenome; Guerrero Negro Hypersaline Mat 01; altitude 310m AMSL; sample depth 1m below water level, 0-1mm depth into the mat
Species
Start position on genome 642
End posion on genome 566
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
cgccacctca
tRNA gene sequence 
GGCGGAGTAGCTCAGTCGGTTAGAGCAGAGGAATCATAATCCTTGTGTCGGGGGTTCGAG
TCCCTCCTCCGCTACCA
Downstream region at tRNA end position 
gccctccaga
Secondary structure (Cloverleaf model)
>ENV08002251	Met	CAT
                   a      ACCA gccctccaga
                     G + T
                     G - C
                     C - G
                     G - C
                     G - C
                     A - T
                     G - C          T G
                    T     C T C C C     A
      T G A        A      | + | | |     G
    C       C T C G       G G G G G     C
    G       | | | |                 T T
    G       G A G C
      T T A        A     GTGTC
                    G + T
                    A - T
                    G - C
                    G - C
                    A - T
                  A       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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