The detailed information of tRNA gene sequence


Sequence ID>ENV08002273
Genome IDABPQ01000709
Search identical group
Phylum/Classmicrobial mat metagenome; Guerrero Negro Hypersaline Mat 02; altitude 310m AMSL; sample depth 1m below water level, 1-2mm depth into the mat
Species
Start position on genome 266
End posion on genome 341
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
aactattttc
tRNA gene sequence 
GCCAGAGTAGCTCAGTTGGTAGAGCGCCTCACTTGTAATGAGGATGTCGCGGGTTCGACT
CCTGTCTCTGGCTTCA
Downstream region at tRNA end position 
ggtgaaagaa
Secondary structure (Cloverleaf model)
>ENV08002273	Thr	TGT
                   c      TTCA ggtgaaagaa
                     G - C
                     C - G
                     C - G
                     A - T
                     G - C
                     A - T
                     G - C          T C
                    T     T G T C C     A
      T G A        A      + | + | |     G
    T       C T C G       G C G G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     ATGTC
                    C - G
                    C - G
                    T - A
                    C - G
                    A - T
                  C       A
                  T       A
                    T G T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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