The detailed information of tRNA gene sequence


Sequence ID>ENV08002293
Genome IDABPQ01006536
Search identical group
Phylum/Classmicrobial mat metagenome; Guerrero Negro Hypersaline Mat 02; altitude 310m AMSL; sample depth 1m below water level, 1-2mm depth into the mat
Species
Start position on genome 232
End posion on genome 307
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
gggcttccac
tRNA gene sequence 
GCCGCTGTAGCTCAGCTGGTAGAGCACGTCATTCGTAATGATGGGGTCGGGGGTTCGAGT
CCCTTCAGCGGCACCA
Downstream region at tRNA end position 
gttcttcaaa
Secondary structure (Cloverleaf model)
>ENV08002293	Thr	CGT
                   c      ACCA gttcttcaaa
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     T - A
                     G - C          T G
                    T     T T C C C     A
      C G A        A      + + | | |     G
    T       C T C G       G G G G G     C
    G       | | | |                 T T
    G       G A G C
      T A          A     GGGTC
                    C - G
                    G + T
                    T - A
                    C - G
                    A - T
                  T       A
                  T       A
                    C G T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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