The detailed information of tRNA gene sequence


Sequence ID>ENV08002304
Genome IDABPQ01008835
Search identical group
Phylum/Classmicrobial mat metagenome; Guerrero Negro Hypersaline Mat 02; altitude 310m AMSL; sample depth 1m below water level, 1-2mm depth into the mat
Species
Start position on genome 471
End posion on genome 545
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
caaggtaaat
tRNA gene sequence 
GGGGAATTAGCTCAGTTGGCTAGAGCGCTACACTGGCAGTGTAGAGGTCATCGGTTCGAA
TCCGATATTCTCCACtt
Downstream region at tRNA end position 
tcatctcttt
Secondary structure (Cloverleaf model)
>ENV08002304	Ala	GGC
                   t      ACtt tcatctcttt
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     A - T
                     T - A          T A
                    T     T A G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A T C G G     C
    G       | | | |                 T T
    G       G A G C
      C T A        G     AGGTC
                    C - G
                    T - A
                    A - T
                    C - G
                    A - T
                  C       G
                  T       A
                    G G C
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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