The detailed information of tRNA gene sequence


Sequence ID>ENV08002315
Genome IDABPR01000488
Search identical group
Phylum/Classmicrobial mat metagenome; Guerrero Negro Hypersaline Mat 03; altitude 310m AMSL; sample depth 1m below water level, 2-3mm depth into the mat
Species
Start position on genome 297
End posion on genome 372
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
gatgcggcac
tRNA gene sequence 
GCCCAGGTAGCTCAGTTGGTAGAGCAGCGGACTGAAAATTCGCGTGTCGGTGGTTCGAAT
CCGCCCCTGGGCACCA
Downstream region at tRNA end position 
taccgttcct
Secondary structure (Cloverleaf model)
>ENV08002315	Phe	GAA
                   c      ACCA taccgttcct
                     G - C
                     C - G
                     C - G
                     C - G
                     A - T
                     G - C
                     G - C          T A
                    T     C C G C C     A
      T G A        A      | | + | |     G
    T       C T C G       G G T G G     C
    G       | | | |                 T T
    G       G A G C
      T A          A     GTGTC
                    G - C
                    C - G
                    G - C
                    G + T
                    A - T
                  C       A
                  T       A
                    G A A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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