The detailed information of tRNA gene sequence


Sequence ID>ENV08002322
Genome IDABPR01004003
Search identical group
Phylum/Classmicrobial mat metagenome; Guerrero Negro Hypersaline Mat 03; altitude 310m AMSL; sample depth 1m below water level, 2-3mm depth into the mat
Species
Start position on genome 675
End posion on genome 586
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
cacaggcatc
tRNA gene sequence 
GGAGCGGTGGCCGAGTGGTCGAAGGCGCACGCCTGGAAAGTGTGTAGGCGGGAAACCGTC
TCGAGGGTTCGAATCCCTCTCGCTCCGCCA
Downstream region at tRNA end position 
ccatcaccat
Secondary structure (Cloverleaf model)
>ENV08002322	Ser	GGA
                   c      GCCA ccatcaccat
                     G - C
                     G - C
                     A - T
                     G - C
                     C - G
                     G - C
                     G + T          T A
                    T     C T C C C     A
      T G A        G      | | | | |     G
    G       G C C G       G A G G G     C
    G         | | |                 T T
    T       A G G C
      C G A        G     TAGGCGGGAAACCGTCTC
                    C - G
                    A - T
                    C - G
                    G + T
                    C - G
                  C       A
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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