The detailed information of tRNA gene sequence


Sequence ID>ENV08002357
Genome IDABPS01003325
Search identical group
Phylum/Classmicrobial mat metagenome; Guerrero Negro Hypersaline Mat 04; altitude 310m AMSL; sample depth 1m below water level, 3-4mm depth into the mat
Species
Start position on genome 575
End posion on genome 498
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
gctttttttt
tRNA gene sequence 
CGGGATGTAGCTCAGTCCGGTTAGAGTGCACGTCTGGGGGGCGTGAGGTCGCTGGTTCGA
ATCCAGTCATCCCGACCA
Downstream region at tRNA end position 
ttttccttct
Secondary structure (Cloverleaf model)
>ENV08002357	Pro	GGG
                   t      ACCA ttttccttct
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     G - C          T A
                    T     T G A C C     A
    C T G A        A      + | | | |     G
  C         C T C G       G C T G G     C
  G         | | | +                 T T
  G         G A G T
    T T A          G     AGGTC
                    C - G
                    A - T
                    C - G
                    G - C
                    T + G
                  C       G
                  T       G
                    G G G
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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