The detailed information of tRNA gene sequence


Sequence ID>ENV08002358
Genome IDABPS01003325
Search identical group
Phylum/Classmicrobial mat metagenome; Guerrero Negro Hypersaline Mat 04; altitude 310m AMSL; sample depth 1m below water level, 3-4mm depth into the mat
Species
Start position on genome 484
End posion on genome 408
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
tccttctttt
tRNA gene sequence 
CGGGATGTAGCGCAGCCCGGTAGCGCGCTTCGTTCGGGACGAAGAGGTCGCTGGTTCGAA
TCCAGTCATCCCGACCA
Downstream region at tRNA end position 
gtctcagcca
Secondary structure (Cloverleaf model)
>ENV08002358	Pro	CGG
                   t      ACCA gtctcagcca
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     G - C          T A
                    T     T G A C C     A
      C G A        A      + | | | |     G
    C       C G C G       G C T G G     C
    C       | | | |                 T T
    G       G C G C
      G T A        G     AGGTC
                    C - G
                    T - A
                    T - A
                    C - G
                    G - C
                  T       A
                  T       G
                    C G G
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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