The detailed information of tRNA gene sequence


Sequence ID>ENV08002364
Genome IDABPS01005840
Search identical group
Phylum/Classmicrobial mat metagenome; Guerrero Negro Hypersaline Mat 04; altitude 310m AMSL; sample depth 1m below water level, 3-4mm depth into the mat
Species
Start position on genome 541
End posion on genome 628
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
cggcccgctc
tRNA gene sequence 
GGAGAGGTGGCAGAGCGGTTGAATGCGCCGGATTCGAAATCCGGTAGTGCCTTCGGGTAC
TCGGGGGTTCGAATCCCCCCCTCTCCGCtt
Downstream region at tRNA end position 
cacgatcgcc
Secondary structure (Cloverleaf model)
>ENV08002364	Ser	CGA
                   c      GCtt cacgatcgcc
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C C C C C     A
      C G A        G      | | | | |     G
    G       G A C G       G G G G G     C
    G         | | |                 T T
    T       A T G C
      T G A        G     TAGTGCCTTCGGGTACTC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  T       A
                  T       A
                    C G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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