The detailed information of tRNA gene sequence


Sequence ID>ENV08002371
Genome IDABPS01008125
Search identical group
Phylum/Classmicrobial mat metagenome; Guerrero Negro Hypersaline Mat 04; altitude 310m AMSL; sample depth 1m below water level, 3-4mm depth into the mat
Species
Start position on genome 648
End posion on genome 571
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
ccattgcaac
tRNA gene sequence 
GTCCCCATCGTCTAGTCAGGTCCAGGACACTGGCCTTTCACGCCAGCAACACCGGTTCAA
ATCCGGTTGGGGACGCCA
Downstream region at tRNA end position 
ctcgaatatt
Secondary structure (Cloverleaf model)
>ENV08002371	Glu	TTC
                   c      GCCA ctcgaatatt
                     G - C
                     T - A
                     C - G
                     C - G
                     C - G
                     C - G
                     A - T          T A
                    T     T G G C C     A
    C T G A        C      | | | | |     A
  A         T C T G       A C C G G     C
  G         + | | |                 T T
  G         G G A C
    T C C A        A     CAAC
                    C - G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       C
                  T       A
                    T T C
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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