The detailed information of tRNA gene sequence


Sequence ID>ENV08002408
Genome IDABPT01006149
Search identical group
Phylum/Classmicrobial mat metagenome; Guerrero Negro Hypersaline Mat 05; altitude 310m AMSL; sample depth 1m below water level, 4-5mm depth into the mat
Species
Start position on genome 461
End posion on genome 384
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
tcacaagcgt
tRNA gene sequence 
GTCCCGTTCGTCTAGCCAGGCCTAGGACACTGGGTTTTCATCCCAGCGACAGGGGTTCAA
ATCCCCTACGGGACGCCA
Downstream region at tRNA end position 
tttttttccg
Secondary structure (Cloverleaf model)
>ENV08002408	Glu	TTC
                   t      GCCA tttttttccg
                     G - C
                     T - A
                     C - G
                     C - G
                     C - G
                     G - C
                     T - A          T A
                    T     T C C C C     A
    C C G A        C      | | | | |     A
  A         T C T G       A G G G G     C
  G         + | | |                 T T
  G         G G A C
    C C T A        A     CGAC
                    C - G
                    T - A
                    G - C
                    G - C
                    G - C
                  T       T
                  T       A
                    T T C
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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