The detailed information of tRNA gene sequence


Sequence ID>ENV08002409
Genome IDABPT01007872
Search identical group
Phylum/Classmicrobial mat metagenome; Guerrero Negro Hypersaline Mat 05; altitude 310m AMSL; sample depth 1m below water level, 4-5mm depth into the mat
Species
Start position on genome 495
End posion on genome 424
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ttaaataaaa
tRNA gene sequence 
GGCTCAGTAGCTCAGCGGTAGAGCAGGGGACTCATAAGCCCTTGGTCGCGTGTTCAAATC
ACGCCTGAGCCAtac
Downstream region at tRNA end position 
cgtttgtaga
Secondary structure (Cloverleaf model)
>ENV08002409	Met	CAT
                   a      Atac cgtttgtaga
                     G - C
                     G - C
                     C - G
                     T - A
                     C - G
                     A - T
                     G - C          T A
                    T     C G C A C     A
        G A        A      | | | | |     A
      C     C T C G       G C G T G     C
      G     | | | |                 T T
      G     G A G C
        T A        A     TGGTC
                    G + T
                    G - C
                    G - C
                    G - C
                    A   G
                  C       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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