The detailed information of tRNA gene sequence


Sequence ID>ENV08002420
Genome IDABPT01013979
Search identical group
Phylum/Classmicrobial mat metagenome; Guerrero Negro Hypersaline Mat 05; altitude 310m AMSL; sample depth 1m below water level, 4-5mm depth into the mat
Species
Start position on genome 389
End posion on genome 314
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
actttgatac
tRNA gene sequence 
AGGGGAGTAGCTCAACTGGTAGAGCGACGGTCTCCAAAACCGTAGGCTGCGGGTTCAAGT
CCTGTCTCCCCTGCTA
Downstream region at tRNA end position 
agggcgccaa
Secondary structure (Cloverleaf model)
>ENV08002420	Trp	CCA
                   c      GCTA agggcgccaa
                     A - T
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     G - C          T G
                    T     T G T C C     A
      C A A        A      + | + | |     A
    T       C T C G       G C G G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     AGGCT
                    A - T
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    C C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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