The detailed information of tRNA gene sequence


Sequence ID>ENV08002434
Genome IDABPU01001893
Search identical group
Phylum/Classmicrobial mat metagenome; Guerrero Negro Hypersaline Mat 06; altitude 310m AMSL; sample depth 1m below water level, 5-6mm depth into the mat
Species
Start position on genome 409
End posion on genome 334
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
cgcgacacag
tRNA gene sequence 
GGGCCCATAGCTCAACGGTTAGAGCAGGCGACTCATAATCGCTTGGTTGGGGGTTCGAAT
CCCTCTGGGCCCACCA
Downstream region at tRNA end position 
gttcatccgc
Secondary structure (Cloverleaf model)
>ENV08002434	Met	CAT
                   g      ACCA gttcatccgc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     A - T          T A
                    T     C T C C C     A
      C A A        A      | + | | |     G
    G       C T C G       G G G G G     C
    G       | | | |                 T T
    T       G A G C
      T A          A     TGGTT
                    G + T
                    G - C
                    C - G
                    G - C
                    A - T
                  C       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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