The detailed information of tRNA gene sequence


Sequence ID>ENV08002464
Genome IDABPU01010699
Search identical group
Phylum/Classmicrobial mat metagenome; Guerrero Negro Hypersaline Mat 06; altitude 310m AMSL; sample depth 1m below water level, 5-6mm depth into the mat
Species
Start position on genome 663
End posion on genome 757
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
gtatttttgc
tRNA gene sequence 
GGAAGTGCGCAGCGTTCTGGTGATGCTCCCGGACTTCAAATCCGGTGTGGGGCGCTAACA
CCGTCCCGGGTGGGTTCGATTCCCATGCACTTCCGgnn
Downstream region at tRNA end position 
nnnnnnnnnn
Secondary structure (Cloverleaf model)
>ENV08002464	SeC	TCA
                   c      Ggnn nnnnnnnnnn
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     T - A
                     G - C
                     C - G          T T
                    G     T A C C C     A
      C T T        C      + | | | |     G
    T       G C G A       G T G G G     C
    G       + | | |                 T T
    G       T G C T
      T G A        C     TGTGGGGCGCTAACACCGTCCCGG
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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