The detailed information of tRNA gene sequence


Sequence ID>ENV08002480
Genome IDABPV01003598
Search identical group
Phylum/Classmicrobial mat metagenome; Guerrero Negro Hypersaline Mat 07; altitude 310m AMSL; sample depth 1m below water level, 6-10mm depth into the mat
Species
Start position on genome 293
End posion on genome 369
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
acgtcaagcT
tRNA gene sequence 
GCCCTGGTAGTGTAGTCTGGCCTAACATGGAGCCCTGTCGAGGCTCCGCCCCGGGTTCGA
ATCCCGGCCAGGGCGTag
Downstream region at tRNA end position 
tccgcaaaga
Secondary structure (Cloverleaf model)
>ENV08002480	Asp	GTC
                   T      GTag tccgcaaaga
                     G - C
                     C - G
                     C - G
                     C - G
                     T - A
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C T G A        A      | | | | |     G
  T         T G T G       C C G G G     C
  G         | | | +                 T T
  G         A C A T
    C C T A        G     CGCC
                    G - C
                    A - T
                    G - C
                    C - G
                    C - G
                  C       A
                  T       G
                    G T C
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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