The detailed information of tRNA gene sequence


Sequence ID>ENV08002492
Genome IDABPV01007578
Search identical group
Phylum/Classmicrobial mat metagenome; Guerrero Negro Hypersaline Mat 07; altitude 310m AMSL; sample depth 1m below water level, 6-10mm depth into the mat
Species
Start position on genome 317
End posion on genome 242
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
cgtcggccgg
tRNA gene sequence 
AGGGGTATAGCTCAGTTGGTAGAGCGACGGTCTCCAAAACCGTAGGTCGCGGGTTCGAGC
CCTGCTGCCCCTGCCA
Downstream region at tRNA end position 
tgccctcggg
Secondary structure (Cloverleaf model)
>ENV08002492	Trp	CCA
                   g      GCCA tgccctcggg
                     A - T
                     G - C
                     G - C
                     G - C
                     G - C
                     T + G
                     A - T          C G
                    T     C G T C C     A
      T G A        A      | | + | |     G
    T       C T C G       G C G G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     AGGTC
                    A - T
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    C C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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