The detailed information of tRNA gene sequence


Sequence ID>ENV08002526
Genome IDABPW01007794
Search identical group
Phylum/Classmicrobial mat metagenome; Guerrero Negro Hypersaline Mat 08; altitude 310m AMSL; sample depth 1m below water level, 10-22mm depth into the mat
Species
Start position on genome 219
End posion on genome 295
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
cgctgcatgc
tRNA gene sequence 
AGGCCAGTAGCTCTAACGGCTAGAGCACCGGACTCCAAATCCGGGTGTTGGGGGTTCGAA
TCCCTCCTGGCCTGCCA
Downstream region at tRNA end position 
atccgtccat
Secondary structure (Cloverleaf model)
>ENV08002526	Trp	CCA
                   c      GCCA atccgtccat
                     A - T
                     G - C
                     G - C
                     C - G
                     C - G
                     A - T
                     G - C          T A
                    T     C T C C C     A
      A A T        A      | + | | |     G
    C       C T C G       G G G G G     C
    G       | | | |                 T T
    G       G A G C
      C T A        A     GTGTT
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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