The detailed information of tRNA gene sequence


Sequence ID>ENV08002531
Genome IDABPW01010407
Search identical group
Phylum/Classmicrobial mat metagenome; Guerrero Negro Hypersaline Mat 08; altitude 310m AMSL; sample depth 1m below water level, 10-22mm depth into the mat
Species
Start position on genome 477
End posion on genome 552
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
caactggttc
tRNA gene sequence 
GGGGGTGTAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCATCGGTTCGATC
CCGTTCACCTCCACCA
Downstream region at tRNA end position 
tttagatttt
Secondary structure (Cloverleaf model)
>ENV08002531	Ala	TGC
                   c      ACCA tttagatttt
                     G - C
                     G - C
                     G + T
                     G - C
                     G - C
                     T - A
                     G - C          C T
                    T     T T G C C     A
      C G A        A      |   | | |     G
    T       C T C G       A T C G G     C
    G       | | | |                 T T
    G       G A G C
      G A          G     AGGTC
                    C - G
                    C - G
                    T - A
                    G - C
                    C - G
                  C       C
                  T       A
                    T G C
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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