The detailed information of tRNA gene sequence
[Important Notice]
tRNA genes in Archaeal genomes were obtained from
"SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology,
"6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution,
"25, 2709-2716, 2008".
Sequence ID | >At0004 |
Genome ID | BA000002 |
Phylum/Class | Thermoproteota |
Species | Aeropyrum pernix K1 [BA000002] |
Start position on genome
|
372080
|
End posion on genome
|
372278
|
Amino Acid
|
Asp
|
Anticodon
|
GTC
|
Upstream region at tRNA start position
|
tgtgaaccgg
|
tRNA gene sequence
|
GCCGCGGTAGTATAGCCTGGACTAGTATGCGGGCCTGTCAAGCCCGTGACCCGGGTTCAA ATCCCGGCCGCGGCGCCA
|
Downstream region at tRNA end position
|
ataatcctcg
|
Secondary structure (Cloverleaf model) | >At0004 Asp GTC
g GCCA ataatcctcg
G - C
C - G
C - G
G - C
C - G
G - C
G - C T A
T G G C C C A
C C G A A | | | | | A
T T A T G C C G G G C
G + | | + T T
G G T A T
A C T A G TGAC
C - G
G - C
G - C
G - C
C - G
C A
T A *
G T C
|
tRNA gene sequence including intron sequence (Lowercase is intron sequence.) | GCCGCGGTAGTATAGCCTGGACTAGTATGCGGGCCTGTCAagggccccgcctccgcccca ccctcattctactacacgcttatcaggataaacagccgggcaaacgtttttaaccccgcc gaaattcatactcttcccggggcggaggcgggcctgcggagAGCCCGTGACCCGGGTTCA AATCCCGGCCGCGGCGCCA |
Intron | |
Final decision | ¡û |
Comments | The tRNA gene was obtained from SPLITSdb. |
Genome/Seq. Info. | [Ensembl] |
SPLITSdb | [SPLITSdb] |
Comment |
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Input Comment |
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