The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0016
Genome IDBA000002
Search identical group
Phylum/ClassThermoproteota
SpeciesAeropyrum pernix K1 [BA000002]
Start position on genome 1665596
End posion on genome 1665674
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
ccaataagga
tRNA gene sequence 
GGGCCCGTAGCTCAGCCAGGACCAGAGCGCCGGCCTTCGGAGCCGGCGGTCCCGGGTTCA
AATCCCGGCGGGCCCGCCA
Downstream region at tRNA end position 
caacacactc
Secondary structure (Cloverleaf model)
>At0016	Arg	TCG
                   a      GCCA caacacactc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  A         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    A C C A        G     CGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGCCAGGACCAGAGCGCCGGCCTTCGGAGCCGGCGGTCCCGGGTTCA
AATCCCGGCGGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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