The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0019
Genome IDBA000002
Search identical group
Phylum/ClassThermoproteota
SpeciesAeropyrum pernix K1 [BA000002]
Start position on genome 150360
End posion on genome 150239
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
tagcaagcgg
tRNA gene sequence 
GGGCCCGTCGTCTAGCCTGGCTAGGATGCGGGGTTCGGGACCCCGTGGTCCGGGGTTCAA
ATCCCCGCGGGCCCACCA
Downstream region at tRNA end position 
ccatcccaag
Secondary structure (Cloverleaf model)
>At0019	Pro	CGG
                   g      ACCA ccatcccaag
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
    C C G A        C      | | | | |     A
  T         T C T G       C G G G G     C
  G         + | | +                 T T
  G         G G A T
    C T A          G     TGGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  T*      A
                  T       G
                    C G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTCGTCTAGCCTGGCTAGGATGCGGGGTacggagcagaaggtcccgctggaggg
cgggaggctccgcccgacTCGGGACCCCGTGGTCCGGGGTTCAAATCCCCGCGGGCCCAC
CA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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