The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0022
Genome IDBA000002
Search identical group
Phylum/ClassThermoproteota
SpeciesAeropyrum pernix K1 [BA000002]
Start position on genome 295325
End posion on genome 295231
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
acctgggagg
tRNA gene sequence 
GCCGCCGTAGCTCAGCAGGCAGAGCGCCGGCCTTGTAAGCCGGTGGTCGCGGGTTCGAAT
CCCGCCGGCGGCTCCA
Downstream region at tRNA end position 
caaacatctt
Secondary structure (Cloverleaf model)
>At0022	Thr	TGT
                   g      TCCA caaacatctt
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     C G C C C     A
      C G A        A      | | | | |     G
    A       C T C G       G C G G G     C
    G       | | | |                 T T
    G       G A G C
      C A          G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGCAGGCAGacccctgcgcggggcctaaAGCGCCGGCCTTGTAAGCC
GGTGGTCGCGGGTTCGAATCCCGCCGGCGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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