The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0039
Genome IDBA000002
Search identical group
Phylum/ClassThermoproteota
SpeciesAeropyrum pernix K1 [BA000002]
Start position on genome 997237
End posion on genome 997162
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
taacggaggg
tRNA gene sequence 
GCCGCCGTAGCTCAGCTGGCAGAGCGCCGCCCTGGTAAGGCGGAGGCCCCGGGTTCGAAT
CCCGGCGGCGGCTCCA
Downstream region at tRNA end position 
aatcccatcc
Secondary structure (Cloverleaf model)
>At0039	Thr	GGT
                   g      TCCA aatcccatcc
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     G
    T       C T C G       C C G G G     C
    G       | | | |                 T T
    G       G A G C
      C A          G     AGGCC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGCTGGCAGAGCGCCGCCCTGGTAAGGCGGAGGCCCCGGGTTCGAAT
CCCGGCGGCGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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