The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0053
Genome IDDP000238
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCenarchaeum symbiosum [DP000238]
Start position on genome 44600
End posion on genome 44671
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
gtggcaccgc
tRNA gene sequence 
GGTGAGATGGCAGAGCGGTTATGCGTGGGCCTGCAAAGCCTATCTATGGGGGTTCAACTC
CCTCTCTCACCTtca
Downstream region at tRNA end position 
atactgtgtc
Secondary structure (Cloverleaf model)
>At0053	Cys	GCA
                   c      Ttca atactgtgtc
                     G - C
                     G - C
                     T - A
                     G - C
                     A - T
                     G - C
                     A - T          T C
                    T     C T C C C     A
        G A        G      | + | | |     A
      C     G A C G       G G G G G     C
      G       | | |                 T T
      G     A T G C
        T T        G     TCTAT
                    T - A
                    G + T
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGTGAGATGGCAGAGCGGTTATGCGTGGGCCTGCAAAGCCTATCTATGGGGGTTCAACTC
CCTCTCTCACCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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